Publications By Year

2022

85. Oyama LB, Olleik H, Teixeira ACN, Guidini MM, Pickup JA, Hui BYP, Vidal N, Cookson AR, Vallin H, Wilkinson T, Bazzolli DMS, Richards J, Wootton M, Mikut R, Hilpert K, Maresca M, Perrier J, Hess M, Mantovani HC, Fernandez-Fuentes N, Creevey CJ, Huws SA. In silico identification of two peptides with antibacterial activity against multidrug-resistant Staphylococcus aureus. NPJ Biofilms Microbiomes. 2022 Jul 14;8(1):58. doi: 10.1038/s41522-022-00320-0.

84. Panagiotou ES, Fernandez-Fuentes N, Farraj LA, McKibbin M, Elçioglu NH, Jafri H, Cerman E, Parry DA, Logan CV, Johnson CA, Inglehearn CF, Toomes C, Ali M. Novel SIX6 mutations cause recessively inherited congenital cataract, microcornea, and corneal opacification with or without coloboma and microphthalmia. Mol Vis. 2022 May 17;28:57-69. eCollection 2022.

83. Meseguer A, Bota P, Fernandez-Fuentes N, Oliva B. Prediction of Protein-Protein Binding Affinities from Unbound Protein Structures. Methods Mol Biol. 2022;2385:335-351. doi: 10.1007/978-1-0716-1767-0_16.

82. Davey SD, Chalmers IW, Fernandez-Fuentes N, Swain MT, Smith D, Abbas Abidi SM, Saifullah MK, Raman M, Ravikumar G, McVeigh P, Maule AG, Brophy PM, Morphew RM. In silico characterisation of the complete Ly6 protein family in Fasciola gigantica supported through transcriptomics of the newly-excysted juveniles. Mol Omics. 2022 Jan 17;18(1):45-56. doi: 10.1039/d1mo00254f.

2021

81. Düzgüneş N, Fernandez-Fuentes N, Konopka K. Inhibition of Viral Membrane Fusion by Peptides and Approaches to Peptide Design. Pathogens. 2021 Dec 9;10(12):1599. doi: 10.3390/pathogens10121599.

80. Fernandez-Fuentes N, Molina R, Oliva B. A Collection of Designed Peptides to Target SARS-CoV-2 Spike RBD-ACE2 Interaction. Int J Mol Sci. 2021 Oct 27;22(21):11627. doi: 10.3390/ijms222111627.

79. Galletti C, Bota PM, Oliva B, Fernandez-Fuentes N. Mining drug-target and drug-adverse drug reaction databases to identify target-adverse drug reaction relationships. Database (Oxford). 2021 Oct 20;2021:baab068. doi: 10.1093/database/baab068.

78. Anton B, Besalú M, Fornes O, Bonet J, Molina A, Molina-Fernandez R, De Las Cuevas G, Fernandez-Fuentes N, Oliva B. On the use of direct-coupling analysis with a reduced alphabet of amino acids combined with super-secondary structure motifs for protein fold prediction. NAR Genom Bioinform. 2021 Apr 22;3(2):lqab027. doi: 10.1093/nargab/lqab027. eCollection 2021 Jun.

77. Onime LA, Oyama LB, Thomas BJ, Gani J, Alexander P, Waddams KE, Cookson A, Fernandez-Fuentes N, Creevey CJ, Huws SA. The rumen eukaryotome is a source of novel antimicrobial peptides with therapeutic potential. BMC Microbiol. 2021 Apr 8;21(1):105. doi: 10.1186/s12866-021-02172-8.

76. Jones C, De Vega J, Worthington M, Thomas A, Gasior D, Harper J, Doonan J, Fu Y, Bosch M, Corke F, Arango J, Cardoso JA, de la Cruz Jimenez J, Armstead I, Fernandez-Fuentes N. A Comparison of Differential Gene Expression in Response to the Onset of Water Stress Between Three Hybrid Brachiaria Genotypes. Front Plant Sci. 2021 Mar 19;12:637956. doi: 10.3389/fpls.2021.637956. eCollection 2021.

75. Guerrero-Puigdevall M, Fernandez-Fuentes N, Frigola J. Stabilisation of half MCM ring by Cdt1 during DNA insertion. Nat Commun. 2021 Mar 19;12(1):1746. doi: 10.1038/s41467-021-21932-8.

74. Badia-Villanueva M, Defaus S, Foj R, Andreu D, Oliva B, Sierra A, Fernandez-Fuentes N. Evaluation of Computationally Designed Peptides against TWEAK, a Cytokine of the Tumour Necrosis Factor Ligand Family. Int J Mol Sci. 2021 Jan 21;22(3):1066. doi: 10.3390/ijms22031066.

73. Aguirre-Plans J, Piñero J, Souza T, Callegaro G, Kunnen SJ, Sanz F, Fernandez-Fuentes N, Furlong LI, Guney E, Oliva B. An ensemble learning approach for modeling the systems biology of drug-induced injury. Biol Direct. 2021 Jan 12;16(1):5. doi: 10.1186/s13062-020-00288-x.

72. Worthington M, Perez JG, Mussurova S, Silva-Cordoba A, Castiblanco V, Cardoso Arango JA, Jones C, Fernandez-Fuentes N, Skot L, Dyer S, Tohme J, Di Palma F, Arango J, Armstead I, De Vega JJ. A new genome allows the identification of genes associated with natural variation in aluminium tolerance in Brachiaria grasses. J Exp Bot. 2021 Feb 2;72(2):302-319. doi: 10.1093/jxb/eraa469.

71. Aguirre-Plans J, Meseguer A, Molina-Fernandez R, Marín-López MA, Jumde G, Casanova K, Bonet J, Fornes O, Fernandez-Fuentes N, Oliva B. SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions. BMC Bioinformatics. 2021 Jan 6;22(1):4. doi: 10.1186/s12859-020-03770-5.

70. Perez-Amill L, Suñe G, Antoñana-Vildosola A, Castella M, Najjar A, Bonet J, Fernández-Fuentes N, Inogés S, López A, Bueno C, Juan M, Urbano-Ispizua A, Martín-Antonio B. Preclinical development of a humanized chimeric antigen receptor against B cell maturation antigen for multiple myeloma. Haematologica. 2021 Jan 1;106(1):173-184. doi: 10.3324/haematol.2019.228577.

69. Perally S, Geyer KK, Farani PSG, Chalmers IW, Fernandez-Fuentes N, Maskell DR, Hulme BJ, Forde-Thomas J, Phillips D, Farias LP, Collins JJ 3rd, Hoffmann KF. Schistosoma mansoni venom allergen-like protein 6 (SmVAL6) maintains tegumental barrier function. Int J Parasitol. 2021 Mar;51(4):251-261. doi: 10.1016/j.ijpara.2020.09.004.

2020

68. Nibau C, Dadarou D, Kargios N, Mallioura A, Fernandez-Fuentes N, Cavallari N, Doonan JH. A Functional Kinase Is Necessary for Cyclin-Dependent Kinase G1 (CDKG1) to Maintain Fertility at High Ambient Temperature in Arabidopsis. Front Plant Sci. 2020 Nov 10;11:586870. doi: 10.3389/fpls.2020.586870.

67. Ruben Molina, Baldo Oliva, View ORCID ProfileNarcis Fernandez-Fuentes A collection of designed peptides to target SARS-Cov-2 – ACE2 interaction: PepI-Covid19 database. bioRxiv. doi.org/10.1101/2020.04.28.051789

66. Artigas L, Coma M, Matos-Filipe P, Aguirre-Plans J, Farrés J, Valls R, Fernandez-Fuentes N, de la Haba-Rodriguez J, Olvera A, Barbera J, Morales R, Oliva B, Mas JM. In-silico drug repurposing study predicts the combination of pirfenidone and melatonin as a promising candidate therapy to reduce SARS-CoV-2 infection progression and respiratory distress caused by cytokine storm. PLoS One. 2020 Oct 2;15(10):e0240149. doi: 10.1371/journal.pone.0240149.

65. Mirela-Bota P, Aguirre-Plans J, Meseguer A, Galletti C, Segura J, Planas-Iglesias J, Garcia-Garcia J, Guney E, Oliva B, Fernandez-Fuentes N. Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data. J Mol Biol. 2020 Sep 23:166656. doi: 10.1016/j.jmb.2020.09.015.

64. Meseguer A, Dominguez L, Bota PM, Aguirre-Plans J, Bonet J, Fernandez-Fuentes N, Oliva B. Using collections of structural models to predict changes of binding affinity caused by mutations in protein-protein interactions. Protein Sci. 2020 Oct;29(10):2112-2130. doi: 10.1002/pro.3930. Epub 2020 Sep 5.

63. Velasco-Hernandez T, Zanetti SR, Roca-Ho H, Gutierrez-Aguera F, Petazzi P, Sánchez-Martínez D, Molina O, Baroni ML, Fuster JL, Ballerini P, Bueno C, Fernandez-Fuentes N, Engel P, Menendez P. Efficient elimination of primary B-ALL cells in vitro and in vivo using a novel 4-1BB-based CAR targeting a membrane-distal CD22 epitope J Immunother Cancer. 2020 Aug;8(2):e000896. doi: 10.1136/jitc-2020-000896.

62. Meseguer A, Årman F, Fornes O, Molina-Fernández R, Bonet J, Fernandez-Fuentes N, Oliva B. On the prediction of DNA-binding preferences of C2H2-ZF domains using structural models: application on human CTCF. NAR Genom Bioinform. 2020 Jul 1;2(3):lqaa046. doi: 10.1093/nargab/lqaa046.

61. Guillem Jorba, Joaquim Aguirre-Plans, Valentin Junet, Cristina Segú-Vergés, José Luis Ruiz, Albert Pujol, Narcis Fernandez-Fuentes, Jose Manuel Mas, Baldo Oliva In-silico simulated prototype-patients using TPMS technology to study a potential adverse effect of sacubitril and valsartan PLoS One. 2020 Feb 13;15(2):e0228926.doi: 10.1371/journal.pone.0228926.

60. Joaquim Aguirre-Plans, Janet Pinero, Daniel Aguilar, Emre Guney, Ferran Sanz, Laura Furlong, Narcis Fernandez-Fuentes, Baldo Oliva A review of network medicine approaches to understand comorbidity Advances in Medicine and Biology, Volume 158, Leon V. Berhardt Editor, Nova Medicine & Health. Published by Nova Science Publishers, Inc. New York

59. Perez-Amill L, Suñe G, Antoñana-Vildosola A, Castella M, Najjar A, Bonet J, Fernández-Fuentes N, Inogés S, López A, Bueno C, Juan M, Urbano-Ispizua A, Martín-Antonio B. Preclinical development of a humanized chimeric antigen receptor against B cell maturation antigen for multiple myeloma. Haematologica. 2020 Jan 9. pii: haematol.2019.228577. doi: 10.3324/haematol.2019.228577.

2019

58.Jose J. De Vega, Robert P. Davey, Jorge Duitama, Dario Escobar, Marco A. Cristancho-Ardila, Graham J. Etherington, Alice Minoto, Nelson E. Arenas-Suarez, Juan D. Pineda-Cardenas, Javier Correa-Alvarez, Anyela V Carmago-Rodrigues, Wilfrei Haerty, Juan P. Mallarino-Robayo, Emiliano Barreto-Hernandez, Monica Munos-Torres, Narcis Fernandez-Fuentes, Federica Di Palma Colombia’s cyberinfrastructure for biodiversity: Building data infrastructure in emerging countries to Foster socioeconomic growth. Plants, People, Planet. doi: 10.1002/ppp3.10086

57. Fradera-Sola A, Thomas A, Gasior D, Harper J, Hegarty M, Armstead I, Fernandez-Fuentes N. Differential gene expression and gene ontologies associated with increasing water-stress in leaf and root transcriptomes of perennial ryegrass (Lolium perenne). PLoS One. 2019 Jul 30;14(7):e0220518.

56. Aguirre-Plans J, Piñero J, Sanz F, Furlong LI, Fernandez-Fuentes N, Oliva B, Guney E. GUILDify v2.0: A Tool to Identify Molecular Networks Underlying Human Diseases, Their Comorbidities and Their Druggable Targets. J Mol Biol. 2019 Mar 7. pii: S0022-2836(19)30117-2. doi: 10.1016/j.jmb.2019.02.027. [Epub ahead of print]

55. Harper J, De Vega J, Swain S, Heavens D, Gasior D, Thomas A, Evans C, Lovatt A, Lister S, Thorogood D, Skøt L, Hegarty M, Blackmore T, Kudrna D, Byrne S, Asp T, Powell W, Fernandez-Fuentes N, Armstead I. Integrating a newly developed BAC-based physical mapping resource for Lolium perenne with a genome-wide association study across a L. perenne European ecotype collection identifies genomic contexts associated with agriculturally important traits. Ann Bot. 2019 Feb 2. doi: 10.1093/aob/mcy230. [Epub ahead of print]

2018

54. Sharma P, Lioutas A, Fernandez-Fuentes N, Quilez J, Carbonell-Caballero J, Wright RHG, Di Vona C, Le Dily F, Schüller R, Eick D, Oliva B, Beato M. Arginine Citrullination at the C-Terminal Domain Controls RNA Polymerase II Transcription. Mol Cell. 2018 Nov 6. pii: S1097-2765(18)30848-7. doi: 10.1016/j.molcel.2018.10.016. [Epub ahead of print]

53. Quevedo CE, Cruz-Migoni A, Bery N, Miller A, Tanaka T, Petch D, Bataille CJR, Lee LYW, Fallon PS, Tulmin H, Ehebauer MT, Fernandez-Fuentes N, Russell AJ, Carr SB, Phillips SEV, Rabbitts TH. Small molecule inhibitors of RAS-effector protein interactions derived using an intracellular antibody fragment. Nature Communications 2018 Aug 9;9(1):3169. doi: 10.1038/s41467-018-05707-2

52. Geyer KK, Munshi SE, Whiteland HL, Fernandez-Fuentes N, Phillips DW, Hoffmann KF. Methyl-CpG-binding (SmMBD2/3) and chromobox (SmCBX) proteins are required for neoblast proliferation and oviposition in the parasitic blood fluke Schistosoma mansoni. PLoS Pathog. 2018 Jun 28;14(6):e1007107.

51. Somani A, Smith D, Hegarty M, Fernandez-Fuentes N, Ravella SR, Gallagher JA, Bryant DN. Draft Genome Assemblies of Xylose-Utilizing Candida tropicalis and Candida boidinii with Potential Application in Biochemical and Biofuel Production Genome Announc. 2018 Feb 15;6(7). pii: e01594-17. doi:10.1128/genomeA.01594-17

2017

50. Linda B. Oyama, Susan E. Girdwood, Alan R. Cookson, Narcis Fernandez-Fuentes, Florence Privé, Hannah E. Vallin, Toby J. Wilkinson, Peter N. Golyshin, Olga V. Golyshina, Ralf Mikut, Kai Hilpert, Jennifer Richards, Mandy Wootton, Joan E. Edwards, Marc Maresca, Josette Perrier, Fionnuala T. Lundy, Yu Luo, Mei Zhou, Matthias Hess, Hilario C. Mantovani, Christopher J. Creevey & Sharon A. Huws. The rumen microbiome: an underexplored resource for novel antimicrobial discovery npj Biofilms and Microbiomes 3: 33 (2017) doi:10.1038/s41522-017-0042-1

49. Manuel Alejandro Marin-Lopez, Joan Planas-Iglesias, Joaquim Aguirre-Plans, Jaume Bonet, Javier Garcia-Garcia, Narcis Fernandez-Fuentes, Baldo Oliva. On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures. Bioinformatics. 2017 Sep 27. doi: 10.1093/bioinformatics/btx616. [Epub ahead of print].

48. Carlota Rubio-Perez, Emre Guney, Daniel Aguilar, Janet Piñero, Javier Garcia-Garcia, Barbara Iadarola, Ferran Sanz, Narcis Fernandez-Fuentes, Laura I. Furlong, Baldo Oliva. Genetic and functional characterization of disease associations explains comorbidity. Sci Rep. 2017 Jul 24;7(1):6207. doi: 10.1038/s41598-017-04939-4.

47. Linda B. Oyama, Jean-Adrien Crochet, Joan E. Edwards, Susan E. Girdwood, Alan R. Cookson, Narcis Fernandez-Fuentes, Kai Hilpert, Peter N. Golyshin, Olga V. Golyshina, Florence Privé, Matthias Hess, Hilario C. Mantovani, Christopher J. Creevey, Sharon A. Huws. Buwchitin: A ruminal peptide with antimicrobial potential against Enterococcus faecalis. Fronteirs in Chemistry, 5:51. doi: 10.3389/fchem.2017.00051

2016

46. Garcia-Garcia J, Valls-Comamala V, Guney E, Andreu D, Munoz FJ, Fernandez-Fuentes N, Oliva B. iFraG: A protein-protein interface prediction server based on sequence fragments. Journal of Molecular Biolgy. 2016 Dec 9. ppii: S0022-2836(16)20532-9 [Epub ahead of print], doi:10.1016/j.jmb.2016.11.034

45. Roni GH Wright, Narcis Fernandez-Fuentes N, Baldo Oliva, Miguel Beato. Insight into the machinery that oils chromatin dynamics. Nucleus. 016 Nov 28:1-8. [Epub ahead of print], doi:10.1080/19491034.2016.1255392

44. Bouraoui H, Desrousseaux ML, Ioannou E, Alvira P, Manaï M, Rémond C, Dumon C, Fernandez-Fuentes N, O'Donohue MJ. The GH51 α-l-arabinofuranosidase from Paenibacillus sp. THS1 is multifunctional, hydrolyzing main-chain and side-chain glycosidic bonds in heteroxylans. Biotechnol Biofuels. 2016 Jul 8;9:140. doi:10.1186/s13068-016-0550-x.

43. Altan Kara, Martin Vickers, Martin Swain, David E. Whitworth and Narcis Fernandez-Fuentes MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins. Bioinformatics. 2016 Jul 4. pii: btw403. [Epub ahead of print]

42. Daniel Poglayen, Manuel Alejandro Marín-López, Jaume Bonet, Oriol Fornes, Javier Garcia-Garcia, Joan Planas-Iglesias, Joan Segura, Baldo Oliva, Narcis Fernandez-Fuentes InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research. Biochemical Society Transations. 2016 Jun 15;44(3):917-24. doi: 10.1042/BST20150001.

41. Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, Park S, Heo L, Rie Lee G, Seok C, Qin S, Zhou HX, Ritchie DW, Maigret B, Devignes MD, Ghoorah A, Torchala M, Chaleil RA, Bates PA, Ben-Zeev E, Eisenstein M, Negi SS, Weng Z, Vreven T, Pierce BG, Borrman TM, Yu J, Ochsenbein F, Guerois R, Vangone A, Rodrigues JP, van Zundert G, Nellen M, Xue L, Karaca E, Melquiond AS, Visscher K, Kastritis PL, Bonvin AM, Xu X, Qiu L, Yan C, Li J, Ma Z, Cheng J, Zou X, Shen Y, Peterson LX, Kim HR, Roy A, Han X, Esquivel-Rodriguez J, Kihara D, Yu X, Bruce NJ, Fuller JC, Wade RC, Anishchenko I, Kundrotas PJ, Vakser IA, Imai K, Yamada K, Oda T, Nakamura T, Tomii K, Pallara C, Romero-Durana M, Jiménez-García B, Moal IH, Férnandez-Recio J, Joung JY, Kim JY, Joo K, Lee J, Kozakov D, Vajda S, Mottarella S, Hall DR, Beglov D, Mamonov A, Xia B, Bohnuud T, Del Carpio CA, Ichiishi E, Marze N, Kuroda D, Roy Burman SS, Gray JJ, Chermak E, Cavallo L, Oliva R, Tovchigrechko A, Wodak SJ. Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment. Proteins. 2016 Apr 28. doi:10.1002/prot.25007. [Epub ahead of print]

2015

40. Altan Kara, Martin Vickers, Martin Swain, David E Whitworth and Narcis Fernandez-Fuentes. Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor. BMC Bioinformatics. 2015

39. Iain W. Chalmers, Colin M. Fitzsimmons, Martha Brown, Christine Pierrot, Frances M. Jones, Jakub M. Wawrzyniak, Narcis Fernandez-Fuentes, Edridah M. Tukahebwa, David W. Dunne, Jamal Khalife, Karl F. Hoffmann. Human IgG1 Responses to Surface Localised Schistosoma mansoni Ly6 Family Members Drop following Praziquantel Treatment. PLoS Neglected Tropical Diseases. 2015

38. Joan Segura, Manuel-Alejandro Marin-Lopez, Pamela F Jones, Baldomero Oliva and Narcis Fernandez-Fuentes. VORFFIP-Driven Dock: V-D²OCK, a Fast and Accurate Protein Docking Strategy. PLoS One. 2015

37. Baldomero Oliva and Narcis Fernandez-Fuentes. Knowledge-based modeling of peptides at protein interfaces: PiPreD. Bioinformatics. 2015

2014

36. Jaume Bonet, Andras Fiser, Baldomero Oliva, Narcis Fernandez-Fuentes. Smotifs as structural local descriptors of supersecondary elements: classification, completeness and applications Bio-Algorithms and Med-Systems (2014)

35. Jaume Bonet, Joan Segura, Joan Planas-Iglesias, Baldomero Oliva, Narcis Fernandez-Fuentes. Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design Bioinformatics. 2014

34. Helen Sewell, Tomo Tanaka, K. El Omari, Erika J Mancine, A. Cruz, Narcis Fernandez-Fuentes, Jennifer Chambers and Terence H Rabbitts. Conformational flexibility of the oncogenic protein LMO2 primes the formation of the multi-protein transcription complex Scientific Reports. 2014

33. Jaume Bonet, Joan Planas-Iglesias, J Garcia-Garcia, MA Marin-Lopez, Narcis Fernandez-Fuentes and Baldo Oliva. ArchDB 2014: structural classification of loops in proteins Nucleic Acids Research. 2014

2013

32. A. Cruz-Migoni, Narcis Fernandez-Fuentes and Terence H Rabbitts. Peptides: minimal drug surrogates to interrogate and interfere with protein function Medicinal Chemistry Communications. 2013

31. Narcis Fernandez-Fuentes and Andras Fiser. A Modular Perspective of Protein Structures: Application to Fragment Based Loop Modeling Methods in Molecular Biology. 2013

2012

30. Joan Segura, Pamela F Jones and Narcis Fernandez-Fuentes. A holistic in silico approach to predict functional sites in protein structures Bioinformatics. 2012

29. Jose Ramon Blas Pastor, Joan Segura, Narcis Fernandez-Fuentes. Computational Tools and Databases for the Study and Characterization of Protein Interactions. Protein-Protein Interactions - Computational and Experimental Tools, ISBN: 978-953-51-0397-4

2011

28. Kamron Khan, Clare V. Logan1, Martin McKibbin, Eamonn Sheridan, Nursel H. Elçioglu, Ozlem Yenice, David A. Parry, Narcis Fernandez-Fuentes, Zakia I.A. Abdelhamed, Ahmed Al-Maskari, James A. Poulter, Moin D. Mohamed, Ian M. Carr, Joanne E. Morgan, Hussain Jafri, Yasmin Raashid, Graham R. Taylor, Colin A. Johnson, Chris F. Inglehearn, Carmel Toomes, and Manir Ali. Next generation sequencing identifies mutations in Atonal homolog 7 (ATOH7) in families with global eye developmental defects. Human Molecular Genetics. 2011

27. Joan Segura, Baldo Oliva and Narcis Fernandez-Fuentes. CAPS-DB: a structural classification of helix-capping motifs. Nucleic Acids Research. 2011

26. Kamron Khan, Adam Rudkin, David A. Parry, Kathryn P. Burdon, Martin McKibbin, Clare V. Logan, Zakia I.A. Abdelhamed, James S. Muecke, Narcis Fernandez-Fuentes, Kate J. Laurie, Mike Shires, Rhys Fogarty, Ian M. Carr, James A. Poulter, Joanne E. Morgan, Moin D. Mohamed, Hussain Jafri, Yasmin Raashid, Ngy Meng, Horm Piseth, Carmel Toomes, Robert J. Casson, Graham R. Taylor, Michael Hammerton, Eamonn Sheridan, Colin A. Johnson, Chris F. Inglehearn, Jamie E. Craig, Manir Ali. Homozygous Mutations in PXDN Cause Congenital Cataract, Corneal Opacity, and Developmental Glaucoma. AJHM. 2011

25. Joan Segura Mora, Pamela F Jones and Narcis Fernandez-Fuentes. Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi Diagrams (VORFFIP). BMC Bioinformatics. 2011

24. Joan Segura Mora and Narcis Fernandez-Fuentes. PCRPi-DB: a database of computationally annotated hot spots in protein interfaces. Nucleic Acids Research. 2011.

2010

23. Joan Segura Mora, Salam A. Assi, Narcis Fernandez-Fuentes. Presaging Critical Residues in Protein interfaces-Web server (PCRPi-W): a web server to chart hot spot in protein interfaces. PlOS One. 2010.

22. Manir Ali, Beatriz Buentello-Volante, Martin McKibbin, J. Alberto Rocha-Medina, Narcis Fernandez-Fuentes, Wilson Koga-Nakamura, Aruna Ashiq, Kamron Khan,Adam P. Booth, Yasmin Raashid, Hussain Jafri, Aine Rice, Chris F. Inglehearn, Juan Carlos Zenteno. Homozygous FoxE3 mutations cause non-syndromic, bilateral, total sclerocornea, aphakia, microphthalmia and optic disc coloboma. Molecular Vision. 2010.

21. Houman Ashrafian, Louise Docherty, Vincenzo Leo, Christopher Towlson, Monica Neilan, Violetta Steeples, Craig A. Lygate, Tertius Hough, Stuart Townsend, Debbie Williams, Sara Wells, Dominic Norris, Sarah Glyn-Jones, John Land, Ivana Barbaric, Zuzanne Lalanne, Paul Denny, Dorota Szumska, Shoumo Bhattacharya, Julian L. Griffin, Iain Hargreaves, Narcis Fernandez-Fuentes, Michael Cheeseman, Hugh Watkins, T. Neil Dear. A mutation in the mitochondrial fission gene Dnm1l leads to cardomyopathy. PlOS Genetics. 2010.

20. Sarion R. Bowers, Fernando J. Calero-Nieto, Stephanie Valeaux, Narcis Fernandez-Fuentes, and Peter N. Cockerill. Runx1 binds as a dimeric complex to overlapping Runx1 sites within a palindromic element in the human GM-CSF enhancer. Nucleic Acid Research. 2010.

19. N. Fernandez-Fuentes, J. Dybas, A. Fiser. Structural characteristics of novel protein folds. PLoS Computational Biology. 2010.

2009

17. S.A. Assi, T. Tanaka, T.H. Rabbitts, N. Fernandez-Fuentes. PCRPi: Presaging Critical Residues in Protein interface, a new computational tool to chart hot spots in protein interfaces. Nucleic Acids Research. 2009.

16. P.N. Grozdanov, N. Fernandez-Fuentes, A. Fiser, U.T. Meier. Pathogenic NAP57 mutations decrease ribonucleoprotein assembly in dyskeratosis congenita. Human Mol. Genetics. 2009

15. D.M. Blakaj, N. Fernandez-Fuentes, Z. Chen, R. Hegde, A. Fiser, R.D. Burk, M. Brenowitz. Evolutionary and biophysical relationships among the papillomavirus E2 proteins. Frontiers in Bioscience. 2009

2007

14. A. Hermoso, J. Espadaler, E. Querol, F.X. Aviles, M.J.E. Sternberg, B. Oliva, N. Fernandez-Fuentes. ArchDB: Including Functional Annotations and Expanding the Database of Classified Structural Motifs. Bioinformatics and Biology Insights. 2007

13. M. Torres, N. Fernandez-Fuentes, A. Fiser, A. Casadevall. Heterologous constant chains impart kinetic and thermodynamic differences in antigen binding for immunoglobulins with identical variable-regions. PlOS ONE. 2007

12. N. Fernandez-Fuentes, B.K. Rai, C.J. Madrid-Aliste, J.E. Fajardo, A. Fiser. Comparative protein structure modeling by combining of multiple templates and optimizing sequence-to-structure alignments. Bioinformatics. 2007

11. N. Fernandez-Fuentes, B.K. Rai, C.J. Madrid-Aliste, J.E. Fajardo, A. Fiser. M4T: a comparative protein structure modeling server. Nucleic Acids Research. 2007

10. M. Torres, N. Fernandez-Fuentes, A. Fiser, A. Casadevall. The immunoglobulin heavy chain constant region affects kinetic and thermodynamic parameters of antibody variable region interactions with antigen. J.B.C. 2007

2006

9. N. Fernandez-Fuentes, H. Xiao, P. Verdier-Pinar, B. Burd, R. Angeletti, A. Fiser, S.B. Horwitz, G. Orr. Insights into the mechanism of microtubule stabilization by Taxol. PNAS. 2006

8. N. Fernandez-Fuentes and A. Fiser. Saturating representation of conformational fragments in structure databanks. BMC Structural Biology. 2006

7. N. Fernandez-Fuentes, J. Zhai and A. Fiser. ArchPred: a template based loop structure prediction server. Nucleic Acids Research. 2006

6. N. Fernandez-Fuentes, B. Oliva, A. Fiser. A supersecondary structure library and search algorithm for modeling loops in protein structures. Nucleic Acids Research. 2006

2005

5. N. Fernandez-Fuentes, E. Querol, F.X. Aviles, M.J.E. Sternberg, B. Oliva. Prediction of the conformation and geometry of loops in globular proteins: testing ArchDB, a structural classification of loops. Proteins: Structure, Function, and Bioinformatics. 2005

2004

4. N. Fernandez-Fuentes, A. Hermoso, J. Espadaler, E. Querol, F.X. Aviles, B. Oliva. Classification of common functional loops of super-families of kinases. Proteins: Structure, Function, and Bioinformatics. 2004

3. J. Espadaler, N. Fernandez-Fuentes, A. Hermoso, E. Querol, F.X. Aviles, M.J.E. Sternberg, B. Oliva. ArchDB: Automated protein loop classification as a tool for Structural Genomic. Nucleic Acids Research. 2004

2002

1. S. Dietmann, N. Fernandez-Fuentes, L. Holm. Automated detection of remote homology. Current Opinion in Structural Biology. 2002